Journal Papers

  • Kaminuma, E., Mashima, J., Kodama, Y., Gojobori, T.,Ogasawara, O., Okubo, K., Takagi, T., Nakamura,Y.,
    DDBJ launches a new archive database with analytical tools for next-generation sequence data,
    Nucleic Acids Research, 38, D33-D38, 2010.

  • Kurihara, Y., Kaminuma, E., Matsui, A., Kawashima, M., Tanaka, M., Morosawa, T., Ishida, J., Mochizuki, Y., Shinozaki, K., Toyoda, T., Seki, M.,
    Transcriptome Analyses Revealed Diverse Expression Changes in ago1 and hyl1 Arabidopsis Mutants,
    Plant and Cell Physiology, 50:1715-1720, 2009.

  • Kurihara, Y., Matsui, A., Hanada, K., Kawashima, M., Ishida, J., Morosawa, T., Tanaka, M., Kaminuma, E., Mochizuki, Y., Matsushima, A., Toyoda, T., Shinozaki, K., Seki, M.,
    Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis,
    Proceedings of the National Academy of Sciences USA, 17;106(7):2453-8, 2009

  • Kaminuma,E.,Yoshizumi,T.,Wada,T. Matsui,M., Toyoda,T.,
    Quantitative analysis of heterogeneous spatial distribution of Arabidopsis leaf trichomes using micro X-ray computed tomography, The Plant Journal, Vol.56, No.3, 470-482, 2008.

  • Kurihara,Y., Matsui,M., Kawashima,M., Kaminuma,E., Ishida,J., Morosawa,T., Mochizuki,Y., Kobayashi,N., Toyoda,T., Shinozaki,K., Seki,M.,
    Identification of the candidate genes regulated by RNA-directed DNA methylation, Biochemical and Biophysical Research Communications, Vol.376, No.3, 553-557, 2008 .

  • Kaminuma,E., Masuya,H., Miura,I., Motegi,H.,Takahashi,K., Nakazawa,M., Matsui,M., Gondo, Y., Noda,T., Shiroishi, T., Wakana,S., Toyoda,T.,
    Objective evaluation measures of genetic marker selection in large-scale SNP genotyping,
    Journal of Bioinformatics and Computational Biology, Vol.6, No.5, 905-917, 2008.

  • Matsui,A., Ishida,J., Morosawa,T., Mochizuki,Y., Kaminuma,E., Endo.T., Okamoto,M., Nambara,E., Nakajima,M., Kawashima,M., Satou,M., Kim,J.-M., Kobayashi,N., Toyoda,T., Shinozaki,K. and Seki,M., Arabidopsis transcriptome analysis under drought, cold, high-salinity and abscisic acid treatment conditions using a tiling array, Plant Cell Physiology, Vol.49, No.8, pp.1135-1149, 2008.

  • Kaminuma,E., Heida,N., Yoshizumi,T., Nakazawa,M., Matsui,M., Toyoda,T.,
    In silico phenotypic screening method of mutants based on statistical modeling of genetically mixed samples, Journal of Bioinformatics and Computational Biology, Vol.3 No.6, pp.1281-1293, 2005.

  • Kaminuma,E., Heida,N., Tsumoto,Y., Nakazawa,M., Goto,N., Konagaya,A., Matsui,M., Toyoda,T., Three-dimensional de?nition of leaf morphological traits of Arabidopsis in silico phenotypic analysis,
    Journal of Bioinformatics and Computational Biology, Vol.3 No.2, pp.401-414, 2005.

  • Kaminuma,E., Heida,N., Tsumoto,Y., Yamamoto,N., Goto,N., Okamoto,N., Konagaya,A., Matsui,M., Toyoda,T.,
    Automatic quanti?cation of morphological traits via three-dimensional measurement of Arabidopsis,
    The Plant Journal, Vol.38, pp.358-365, 2004.

  • Nakamura,S., Yamamoto,E.,
    Speech-to-Lip Movement Synthesis by Maximizing Audio-Visual Joint Probability based on the EM Algorithm,
    The Journal of VLSI Signal Processing-Systems for Signal, Image, and Video Technology, 27(1-2), pp.119-126, 2001.

  • Yamamoto,E., Nakamura,S., Shikano,K.
    Lip Movement Synthesis from Speech based on Hidden Markov Models,
    Speech Communication, Vol.26, Nos.1-2, pp.105-115, 1998