Our publications of the last 10 years
2022
Mitochondrial genome of Garcinia mangostana L. variety Mesta. Ching-Ching Wee, Nor Azlan Nor Muhammad, Vijay Kumar Subbiah, Masanori Arita, Yasukazu Nakamura, Hoe-Han Goh. Scientific reports, 12(1) 9480-9480 2022年6月8日
Repeated translocation of a supergene underlying rapid sex chromosome turnover in Takifugu pufferfish. Ahammad Kabir, Risa Ieda, Sho Hosoya, Daigaku Fujikawa, Kazufumi Atsumi, Shota Tajima, Aoi Nozawa, Takashi Koyama, Shotaro Hirase, Osamu Nakamura, Mitsutaka Kadota, Osamu Nishimura, Shigehiro Kuraku, Yasukazu Nakamura, Hisato Kobayashi, Atsushi Toyoda, Satoshi Tasumi, Kiyoshi Kikuchi. Proceedings of the National Academy of Sciences of the United States of America, 119(23) e2121469119 2022年6月7日
Genome evolution of a nonparasitic secondary heterotroph, the diatom Nitzschia putrida. Ryoma Kamikawa, Takako Mochizuki, Mika Sakamoto, Yasuhiro Tanizawa, Takuro Nakayama, Ryo Onuma, Ugo Cenci, Daniel Moog, Samuel Speak, Krisztina Sarkozi, Andrew Toseland, Cock van Oosterhout, Kaori Oyama, Misako Kato, Keitaro Kume, Motoki Kayama, Tomonori Azuma, Ken-Ichiro Ishii, Hideaki Miyashita, Bernard Henrissat, Vincent Lombard, Joe Win, Sophien Kamoun, Yuichiro Kashiyama, Shigeki Mayama, Shin-Ya Miyagishima, Goro Tanifuji, Thomas Mock, Yasukazu Nakamura. Science advances, 8(17) eabi5075 2022年4月29日
2021
Identification of the sex-determining factor in the liverwort Marchantia polymorpha reveals unique evolution of sex chromosomes in a haploid system. Miyuki Iwasaki, Tomoaki Kajiwara, Yukiko Yasui, Yoshihiro Yoshitake, Motoki Miyazaki, Shogo Kawamura, Noriyuki Suetsugu, Ryuichi Nishihama, Shohei Yamaoka, Dierk Wanke, Kenji Hashimoto, Kazuyuki Kuchitsu, Sean A Montgomery, Shilpi Singh, Yasuhiro Tanizawa, Masaru Yagura, Takako Mochizuki, Mika Sakamoto, Yasukazu Nakamura, Chang Liu, Frédéric Berger, Katsuyuki T Yamato, John L Bowman, Takayuki Kohchi. Current biology : CB 31(24) 5522-5532 2021年12月20日
Genome sequencing of the NIES Cyanobacteria collection with a focus on the heterocyst-forming clade. Yuu Hirose, Yoshiyuki Ohtsubo, Naomi Misawa, Chinatsu Yonekawa, Nobuyoshi Nagao, Yohei Shimura, Takatomo Fujisawa, Yu Kanesaki, Hiroshi Katoh, Mitsunori Katayama, Haruyo Yamaguchi, Hirofumi Yoshikawa, Masahiko Ikeuchi, Toshihiko Eki, Yasukazu Nakamura, Masanobu Kawachi. DNA research, 28(6) 2021年10月11日
OryzaGenome2.1: Database of Diverse Genotypes in Wild Oryza Species. Hiromi Kajiya-Kanegae, Hajime Ohyanagi, Toshinobu Ebata, Yasuhiro Tanizawa, Akio Onogi, Yuji Sawada, Masami Yokota Hirai, Zi-Xuan Wang, Bin Han, Atsushi Toyoda, Asao Fujiyama, Hiroyoshi Iwata, Katsutoshi Tsuda, Toshiya Suzuki, Misuzu Nosaka-Takahashi, Ken-Ichi Nonomura, Yasukazu Nakamura, Shoko Kawamoto, Nori Kurata, Yutaka Sato. Rice, (New York, N.Y.) 14(1) 24-24 2021年3月4日
Complete sequence and structure of the genome of the harmful algal bloom-forming cyanobacterium Planktothrix agardhii NIES-204T and detailed analysis of secondary metabolite gene clusters. Yohei Shimura, Takatomo Fujisawa, Yuu Hirose, Naomi Misawa, Yu Kanesaki, Yasukazu Nakamura, Masanobu Kawachi, Harmful algae, 101 101942-101942 2021年1月
2020
Sachiko Isobe, Yuki Matsumoto, Claire Chung, Mika Sakamoto, Ting-Fung Chan, Hideki Hirakawa, Genki Ishihara, Hon-Ming Lam, Shinobu Nakayama, Shigemi Sasamoto, Yasuhiro Tanizawa, Akiko Watanabe, Kei Watanabe, Masaru Yagura, Yasukazu Nakamura. AnAms1.0: A high-quality chromosome-scale assembly of a domestic cat Felis catus of American Shorthair breed. bioRxiv. doi: https://doi.org/10.1101/2020.05.19.103788 [preprint]
Tanizawa Y, Kobayashi H, Nomura M, Sakamoto M, Arita M, Nakamura Y, Ohkuma M, Tohno M. Lactobacillus buchneri subsp. silagei subsp. nov., isolated from rice grain silage. Int J Syst Evol Microbiol. 2020 May; 70(5):3111-3116. doi: 10.1099/ijsem.0.004138. Epub 2020 Apr 6.PMID: 32250236
Kaminuma E, Baba Y, Mochizuki M, Matsumoto H, Ozaki H, Okayama T, Kato T, Oki S, Fujisawa T, Nakamura Y, Arita M, Ogasawara O, Kashima H, Takagi T. DDBJ Data Analysis Challenge: a machine learning competition to predict Arabidopsis chromatin feature annotations from DNA sequences. Genes Genet Syst. 2020 Apr 22; 95(1):43-50. doi: 10.1266/ggs.19-00034. Epub 2020 Mar 26. PMID: 32213716
Kobayashi, H, Tanizawa, Y, Sakamoto, M, Nakamura, Y, Ohkuma, M, Tohno, M. Reclassification of Clostridium diolis Biebl and Spröer 2003 as a later heterotypic synonym of Clostridium beijerinckii Donker 1926 (Approved Lists 1980) emend. Keis et al. 2001. Int J Syst Evol Microbiol., doi: 10.1099/ijsem.0.004059. pubmed: 32068529
Montgomery SA*, Tanizawa Y*, Galik B, Wang N, Ito T, Mochizuki T, Akimcheva S, Bowman JL, Cognat V, Maréchal-Drouard L, Ekker H, Hong SF, Kohchi T, Lin SS, Liu LD, Nakamura Y, Valeeva LR, Shakirov EV, Shippen DE, Wei WL, Yagura M, Yamaoka S, Yamato KT, Liu C, Berger F. Chromatin Organization in Early Land Plants Reveals an Ancestral Association between H3K27me3, Transposons, and Constitutive Heterochromatin. Curr Biol. 2020 Feb 24; 30(4):573-588.e7. doi: 10.1016/j.cub.2019.12.015. Epub 2020 Jan 30. PMID: 32004456 [*Equally contributed]
2019
Arimizu Y, Kirino Y, Sato MP, Uno K, Sato T, Gotoh Y, Auvray F, Brugere H, Oswald E, Mainil JG, Anklam KS, Döpfer D, Yoshino S, Ooka T, Tanizawa Y, Nakamura Y, Iguchi A, Morita-Ishihara T, Ohnishi M, Akashi K, Hayashi T, Ogura Y. Large-scale genome analysis of bovine commensal Escherichia coli reveals that bovine-adapted E. coli lineages are serving as evolutionary sources of the emergence of human intestinal pathogenic strains. Genome Res. 2019 Sep; 29(9):1495-1505. doi: 10.1101/gr.249268.119. Epub 2019 Aug 22. PMID: 31439690
Tanizawa Y, Fujisawa T, Arita M, Nakamura Y. Generating Publication-Ready Prokaryotic Genome Annotations with DFAST. Methods Mol Biol. 2019; 1962:215-226. doi: 10.1007/978-1-4939-9173-0_13. PMID: 31020563
Tohno M, Tanizawa Y, Kojima Y, Sakamoto M, Nakamura Y, Ohkuma M, Kobayashi H. Lactobacillus salitolerans sp. nov., a novel lactic acid bacterium isolated from spent mushroom substrates. Int J Syst Evol Microbiol. 2019 Apr; 69(4):964-969. doi: 10.1099/ijsem.0.003224. Epub 2019 Jan 10. PMID: 30628884
Kobayashi H, Tanizawa Y, Sakamoto M, Nakamura Y, Ohkuma M, Tohno M. Reclassification of Paenibacillus thermophilus Zhou et al. 2013 as a later heterotypic synonym of Paenibacillus macerans (Schardinger 1905) Ash et al. 1994. Int J Syst Evol Microbiol. 2019 Feb; 69(2):417-421. doi: 10.1099/ijsem.0.003160. Epub 2018 Dec 12. PMID: 30540240
Tohno M, Tanizawa Y, Kojima Y, Sakamoto M, Nakamura Y, Ohkuma M, Kobayashi H (2019) Lactobacillus salitolerans sp. nov., a novel lactic acid bacterium isolated from spent mushroom substrates. Int J Syst Evol Microbiol. doi: 10.1099/ijsem.0.003224.
2018
Kitazumi A, Pabuayon ICM, Ohyanagi H, Fujita M, Osti B, Shenton MR, Kakei Y, Nakamura Y, Brar DS, Kurata N, de Los Reyes BG. (2018) Potential of Oryza officinalis to augment the cold tolerance genetic mechanisms of Oryza sativa by network complementation. Sci Rep. 8(1):16346. doi: 10.1038/s41598-018-34608-z.
[PubMed: 30397229]
Tanizawa Y, Tada I, Kobayashi H, Endo A, Maeno S, Toyoda A, Arita M, Nakamura Y, Sakamoto M, Ohkuma M, Tohno M. (2018) Lactobacillus paragasseri sp. nov., a sister taxon of Lactobacillus gasseri, based on whole-genome sequence analyses. Int J Syst Evol Microbiol. doi: 10.1099/ijsem.0.003020.
[PubMed: 30226464]
Kanesaki Y, Hirose M, Hirose Y, Fujisawa T, Nakamura Y, Watanabe S, Matsunaga S, Uchida H, Murakami A. (2018) Draft Genome Sequence of the Nitrogen-Fixing and Hormogonia-Inducing Cyanobacterium Nostoc cycadae Strain WK-1, Isolated from the Coralloid Roots of Cycas revoluta. Genome Announc., 6 (7). pii: e00021-18. doi: 10.1128/genomeA.00021-18.
[PubMed: 29449379]
Kodama Y, Mashima J, Kosuge T, Kaminuma E, Ogasawara O, Okubo K, Nakamura Y, Takagi T. (2018) DNA Data Bank of Japan: 30th anniversary. Nucleic Acids Res. 46(D1):D30-D35. doi: 10.1093/nar/gkx926.
[PMID: 29040613]
2017
Shimizu T, Tanizawa Y, Mochizuki T, Nagasaki H, Yoshioka T, Toyoda A, Fujiyama A, Kaminuma E, Nakamura Y. (2017) Draft Sequencing of the Heterozygous Diploid Genome of Satsuma (Citrus unshiu Marc.) Using a Hybrid Assembly Approach. Front Genet. 8:180. doi: 10.3389/fgene.2017.00180.
[PMID: 29259619]
Tanizawa Y, Fujisawa T, Nakamura Y. (2017) DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication. Bioinformatics. doi: 10.1093/bioinformatics/btx713.
[PMID: 29106469]
Bowman JL, Kohchi T, Yamato KT, Jenkins J, Shu S, Ishizaki K, Yamaoka S, Nishihama R, Nakamura Y, Berger F, Adam C, Aki SS, Althoff F, Araki T, Arteaga-Vazquez MA, Balasubrmanian S, Barry K, Bauer D, Boehm CR, Briginshaw L, Caballero-Perez J, Catarino B, Chen F, Chiyoda S, Chovatia M, Davies KM, Delmans M, Demura T, Dierschke T, Dolan L, Dorantes-Acosta AE, Eklund DM, Florent SN, Flores-Sandoval E, Fujiyama A, Fukuzawa H, Galik B, Grimanelli D, Grimwood J, Grossniklaus U, Hamada T, Haseloff J, Hetherington AJ, Higo A, Hirakawa Y, Hundley HN, Ikeda Y, Inoue K, Inoue SI, Ishida S, Jia Q, Kakita M, Kanazawa T, Kawai Y, Kawashima T, Kennedy M, Kinose K, Kinoshita T, Kohara Y, Koide E, Komatsu K, Kopischke S, Kubo M, Kyozuka J, Lagercrantz U, Lin SS, Lindquist E, Lipzen AM, Lu CW, De Luna E, Martienssen RA, Minamino N, Mizutani M, Mizutani M, Mochizuki N, Monte I, Mosher R, Nagasaki H, Nakagami H, Naramoto S, Nishitani K, Ohtani M, Okamoto T, Okumura M, Phillips J, Pollak B, Reinders A, Rövekamp M, Sano R, Sawa S, Schmid MW, Shirakawa M, Solano R, Spunde A, Suetsugu N, Sugano S, Sugiyama A, Sun R, Suzuki Y, Takenaka M, Takezawa D, Tomogane H, Tsuzuki M, Ueda T, Umeda M, Ward JM, Watanabe Y, Yazaki K, Yokoyama R, Yoshitake Y, Yotsui I, Zachgo S, Schmutz J. (2017) Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome. Cell. 171(2):287-304.e15. doi: 10.1016/j.cell.2017.09.030.
[PMID: 28985561]
Minamikawa MF, Nonaka K, Kaminuma E, Kajiya-Kanegae H, Onogi A, Goto S, Yoshioka T, Imai A, Hamada H, Hayashi T, Matsumoto S, Katayose Y, Toyoda A, Fujiyama A, Nakamura Y, Shimizu T, Iwata H. (2017)Genome-wide association study and genomic prediction in citrus: Potential of genomics-assisted breeding for fruit quality traits. Sci Rep. 7(1):4721. doi: 10.1038/s41598-017-05100-x.
[PMID: 28680114]
Shimura Y, Hirose Y, Misawa N, Wakazuki S, Fujisawa T, Nakamura Y, Kanesaki Y, Yamaguchi H, Kawachi M. (2017) Complete Genome Sequence of a Coastal Cyanobacterium, Synechococcus sp. Strain NIES-970. Genome Announc. 5(14). pii: e00139-17. doi: 10.1128/genomeA.00139-17.
[PMID: 28385852]
Tanizawa Y, Kaminuma E, Sakamoto M, Ohkuma M, Nakamura Y, Arita M, Tohno M. (2017) Genomic characterization reconfirms the taxonomic status of Lactobacillus parakefiri. Biosci Microbiota Food Health 36(3):129-134. doi: 10.12938/bmfh.16-026.
[PMID: 28748134]
Takako Mochizuki, Yasuhiro Tanizawa, Takatomo Fujisawa, Tazro Ohta, Naruo Nikoh, Tokurou Shimizu, Atsushi Toyoda, Asao Fujiyama, Nori Kurata, Hideki Nagasaki, Eli Kaminuma and Yasukazu Nakamura. (2017) DNApod: DNA Polymorphism Annotation Database from Next-Generation Sequence Read Archives. PLOS ONE 12(2):e0172269. doi: 10.1371/journal.pone.0172269.
[PMID: 28234924]
2016
Tokurou Shimizu , Akira Kitajima, Keisuke Nonaka, Terutaka Yoshioka, Satoshi Ohta, Shingo Goto, Atsushi Toyoda, Asao Fujiyama, Takako Mochizuki, Hideki Nagasaki, Eli Kaminuma, Yasukazu Nakamura. (2016) Hybrid Origins of Citrus Varieties Inferred from DNA Marker Analysis of Nuclear and Organelle Genomes. PLOS ONE, http://dx.doi.org/10.1371/journal.pone.0166969
http://journals.plos.org/plosone/article?id=10.1371%2Fjournal.pone.0166969
Takatomo Fujisawa, Rei Narikawa, Shin-ichi Maeda, Satoru Watanabe, Yu Kanesaki, Koichi Kobayashi, Jiro Nomata, Mitsumasa Hanaoka, Mai Watanabe, Shigeki Ehira, Eiji Suzuki, Koichiro Awai and Yasukazu Nakamura. (2016) CyanoBase: a large-scale update on its 20th anniversary. Nucl. Acids Res., doi: 10.1093/nar/gkw1131
http://nar.oxfordjournals.org/content/early/2016/11/29/nar.gkw1131.full?keytype=ref&ijkey=vDzkaXzXmXozGE4
Mashima J, Kodama Y, Kosuge T, Fujisawa T, Katayama T, Nagasaki H, Okuda Y, Kaminuma E, Ogasawara O, Okubo K, Nakamura Y, Takagi T. (2016) DNA data bank of Japan (DDBJ) progress report. Nucleic Acids Res. 2016 Jan 4;44(D1):D51-7. doi: 10.1093/nar/gkv1105. Epub 2015 Nov 17.
[PubMed: 26578571]
Tanizawa Y, Fujisawa T, Kaminuma E, Nakamura Y, Arita M. (2016) DFAST and DAGA: web-based integrated genome annotation tools and resources. Biosci Microbiota Food Health. 2016;35(4):173-184.
[PubMed: 27867804]
Hirose Y, Fujisawa T, Ohtsubo Y, Katayama M, Misawa N, Wakazuki S, Shimura Y, Nakamura Y, Kawachi M, Yoshikawa H, Eki T, Kanesaki Y. Complete genome sequence of cyanobacterium Fischerella sp. NIES-3754, providing thermoresistant optogenetic tools. J Biotechnol. 2016 Feb 20;220:45-6. doi: 10.1016/j.jbiotec.2016.01.011.
[PubMed: 26784989]
2015
Hirose Y, Fujisawa T, Ohtsubo Y, Katayama M, Misawa N, Wakazuki S, Shimura Y, Nakamura Y, Kawachi M, Yoshikawa H, Eki T, Kanesaki Y. (2015) Complete genome sequence of cyanobacterium Nostoc sp. NIES-3756, a potentially useful strain for phytochrome-based bioengineering. J Biotechnol., 218: 51-52. doi: 10.1016/j.jbiotec.2015.12.002. [Epub ahead of print]
[PubMed: 26656223]
Bowman JL, Araki T, Arteaga-Vazquez MA, Berger F, Dolan L, Haseloff J, Ishizaki K, Kyozuka J, Lin SS, Nagasaki H, Nakagami H, Nakajima K, Nakamura Y, Ohashi-Ito K, Sawa S, Shimamura M, Solano R, Tsukaya H, Ueda T, Watanabe Y, Yamato KT, Zachgo S, Kohchi T. (2015) The naming of names: guidelines for gene nomenclature in Marchantia. Plant Cell Physiol., pii: pcv193. [Epub ahead of print] Review.
[PubMed: 26644462]
Ohyanagi H, Ebata T, Huang X, Gong H, Fujita M, Mochizuki T, Toyoda A, Fujiyama A, Kaminuma E, Nakamura Y, Feng Q, Wang ZX, Han B, Kurata N. (2015) OryzaGenome: Genome Diversity Database of Wild Oryza Species. Plant Cell Physiol., pii: pcv171. [Epub ahead of print]
[PubMed: 26578696]
Mashima J, Kodama Y, Kosuge T, Fujisawa T, Katayama T, Nagasaki H, Okuda Y, Kaminuma E, Ogasawara O, Okubo K, Nakamura Y, Takagi T. (2015) DNA data bank of Japan (DDBJ) progress report. Nucleic Acids Res., pii: gkv1105. [Epub ahead of print]
[PubMed: 26578571]
Hirose Y, Suda K, Liu YG, Sato S, Nakamura Y, Yokoyama K, Yamamoto N, Hanano S, Takita E, Sakurai N, Suzuki H, Nakamura Y, Kaneko T, Yano K, Tabata S, Shibata D. (2015) Arabidopsis TAC Position Viewer: a high-resolution map of transformation-competent artificial chromosome (TAC) clones aligned with the Arabidopsis thaliana Columbia-0 genome. Plant J., doi: 10.1111/tpj.12949. [Epub ahead of print]
[PubMed: 26227242]
Tanizawa Y, Tohno M, Kaminuma E, Nakamura Y, Arita M. (2015) Complete genome sequence and analysis of Lactobacillus hokkaidonensis LOOC260T, a psychrotrophic lactic acid bacterium isolated from silage. BMC Genomics, Mar 25;16:240. doi: 10.1186/s12864-015-1435-2.
[PubMed: 25879859]
Hiraide Y, Oshima K, Fujisawa T, Uesaka K, Hirose Y, Tsujimoto R, Yamamoto H, Okamoto S, Nakamura Y, Terauchi K, Omata T, Ihara K, Hattori M, Fujita Y. (2015) Loss of Cytochrome cM Stimulates Cyanobacterial Heterotrophic Growth in the Dark. Plant Cell Physiol., 56, 334-345. doi: 10.1093/pcp/pcu165
[PubMed: 25416288]
Kodama Y, Mashima J, Kosuge T, Katayama T, Fujisawa T, Kaminuma E, Ogasawara O, Okubo K, Takagi T, Nakamura Y. (2015) The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data. Nucleic Acids Res., 43, D18-22. doi: 10.1093/nar/gku1120.
[PubMed: 25477381]
Kanesaki Y, Masutani H, Sakanaka M, Shiwa Y, Fujisawa T, Nakamura Y, Yokota A, Fukiya S, Suzuki T, Yoshikawa H. (2015) Complete Genome Sequence of Bifidobacterium longum 105-A, a Strain with High Transformation Efficiency. Genome Announc., 2, pii: e01311-14. doi: 10.1128/genomeA.01311-14.
[PubMed: 25523770]
2014
Tanizawa Y, Fujisawa T, Mochizuki T, Kaminuma E, Nakamura Y, Tohno M. (2014) Draft Genome Sequence of Lactobacillus oryzae Strain SG293T. Genome Announc., 2, pii: e00861-14. doi: 10.1128/genomeA.00861-14.
[PubMed: 25169865]
Uchiyama J, Asakura R, Moriyama A, Kubo Y, Shibata Y, Yoshino Y, Tahara H, Matsuhashi A, Sato S, Nakamura Y, Tabata S, Ohta H. (2014) Sll0939 is induced by Slr0967 in the cyanobacterium Synechocystis sp. PCC6803 and is essential for growth under various stress conditions. Plant Physiol Biochem., 81, 36-43. doi: 10.1016/j.plaphy.2014.02.007.
[PubMed: 24629663]
Tanizawa Y, Fujisawa T, Mochizuki T, Kaminuma E, Suzuki Y, Nakamura Y, Tohno M. (2014) Draft genome sequence of Weissella oryzae SG25T isolated from fermented rice grains.Genome Announc., 2, pii: e00667-14. doi: 10.1128/genomeA.00667-14.
[PubMed: 25013139]
Hori K, Maruyama F, Fujisawa T, Togashi T, Yamamoto N, Seo M, Sato S, Yamada T, Mori H, Tajima N, Moriyama T, Ikeuchi M, Watanabe M, Wada H, Kobayashi K, Saito M, Masuda T, Sasaki-Sekimoto Y, Mashiguchi K, Awai K, Shimojima M, Masuda S, Iwai M, Nobusawa T, Narise T, Kondo S, Saito H, Sato R, Murakawa M, Ihara Y, Oshima-Yamada Y, Ohtaka K, Satoh M, Sonobe K, Ishii M, Ohtani R, Kanamori-Sato M, Honoki R, Miyazaki D, Mochizuki H, Umetsu J, Higashi K, Shibata D, Kamiya Y, Sato N, Nakamura Y, Tabata S, Ida S, Kurokawa K, Ohta H. (2014) Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation. Nature comm., 5, 3978. doi:10.1038/ncomms4978
[PubMed: 24865297]
Iida N, Yamao F, Nakamura Y, Iida T. (2014) Mudi, a web tool for identifying mutations by bioinformatics analysis of whole-genome sequence. Genes to Cells, 19(6): 517-527. doi: 10.1111/gtc.12151.
[PubMed: 24766403]
Kobayashi M, Nagasaki H, Garcia V, Just D, Bres C, Mauxion JP, Le Paslier MC, Brunel D, Suda K, Minakuchi Y, Toyoda A, Fujiyama A, Toyoshima H, Suzuki T, Igarashi K, Rothan C, Kaminuma E, Nakamura Y, Yano K, Aoki K. (2014) Genome-Wide Analysis of Intraspecific DNA Polymorphism in ‘Micro-Tom’, a Model Cultivar of Tomato (Solanum lycopersicum). Plant Cell Physiol., 55 (2): 445-454 doi: 10.1093/pcp/pct181. Epub 2013 Dec 5.
[PubMed: 24319074]
Asamizu E, Ichihara H, Nakaya A, Nakamura Y, Hirakawa H, Ishii T, Tamura T, Fukami-Kobayashi K, Nakajima Y, Tabata S. (2014) Plant Genome DataBase Japan (PGDBj): A Portal Website for the Integration of Plant Genome-Related Databases. Plant Cell Physiol., 55 (1): e8. doi: 10.1093/pcp/pct189. Epub 2013 Dec 19.
[PubMed: 24363285]
Fukami-Kobayashi K, Nakamura Y, Tamura T, Kobayashi M. (2014) SABRE2: A Database Connecting Plant EST/Full-Length cDNA Clones with Arabidopsis Information. Plant Cell Physiol., 55(1): e5. doi: 10.1093/pcp/pct177. Epub 2013 Dec 9.
[PubMed: 24323624]
Fujisawa T, Okamoto S, Katayama T, Nakao M, Yoshimura H, Kajiya-Kanegae H, Yamamoto S, Yano C, Yanaka Y, Maita H, Kaneko T, Tabata S, Nakamura Y. (2014) CyanoBase and RhizoBase: databases of manually curated annotations for cyanobacterial and rhizobial genomes. Nucleic Acids Res., 42(1): D666-670. doi: 10.1093/nar/gkt1145. Epub 2013 Nov 25.
[PubMed: 24275496]
Kosuge T, Mashima J, Kodama Y, Fujisawa T, Kaminuma E, Ogasawara O, Okubo K, Takagi T, Nakamura Y. (2014) DDBJ progress report: a new submission system for leading to a correct annotation. Nucleic Acids Res., 42(1): D44-49. doi: 10.1093/nar/gkt1066. Epub 2013 Nov 4.
[PubMed: 24194602]